Duparquetia orchidacea
Introduction
Duparquetia orchidacea (Fabaceae, Fabales) is the single species belongs to Duparquetioideae subfamily. It distributes in West and West-Central of Africa. This species is not able to form root nodules.
| Genus | Duparquetia |
|---|---|
| Species | Duparquetia orchidacea Baill. |
| Assembly Level | Scaffold |
| Chromosome Number | - |
| Genome Size | 470.9 Mb |
| Contig N50 | 61.8 Kb |
Assembly
A hybrid assembly was first built using a combination of 20.25 Gb ONT long reads (PromethION sequencer (ONT, UK) for 48 hours at Wuhan Benagen Technology Co., Ltd. (Wuhan, China)) and 98.94 Gb short reads (MGISEQ-2000) by MaSuRCA v4.0.6 6. The resulting assembly was then polished by mapping clean short reads to the genome by bwa v0.7.17-r1188 and polished with nextpolish v1.1.0 with "task = best".
Annotation
For genome annotation, the repeat masked genome was annotated with GeMoMa pipeline v1.7.1 with annotations from A. thaliana (TAIR10), M. truncatula (MtrunA17r5.0), and Z. insignis. Three predicted sets were merged with GeMoMa GAF module v1.7.1 to produce final annotations.
Download
| Fasta file | Duparquetia_orchidacea.fa |
|---|---|
| GFF3 file | Duparquetia_orchidacea.gff3 |
| CDS file | Duparquetia_orchidacea.cds |
| Protein file | Duparquetia_orchidacea.pep |
| geneID | geneName | chrid | start | end | strand |
|---|